Depth-Specific Organization of Cortical Inhibitory Neurons
Felipe Yáñez
Developing new analysis methods to uncover the relationships between cortical depth and properties of cortical inhibitory neurons, across species and cortical areas, using publicly-available datasets
Field
Neuroscience
Funding Period
2024
Program
NeuroData Discovery
Open Data in Neuroscience
Institution
Max Planck Institute for Neurobiology of Behavior
Enhancing Interoperability, UI and Documentation of MOOSE
Upinder Singh Bhalla
Enhance the Multiscale Object-Oriented Simulation Environment (MOOSE) software package and support outreach and training activities to make computational modeling more globally accessible
Field
Neuroscience
Funding Period
2024-2025
Program
Neuro Open Source Software
Open Data in Neuroscience
Institution
National Centre for Biological Sciences, Bengaluru, India
Collaborators
Chan Zuckerberg Initiative
Wellcome Trust
Next-Generation Movement Monitoring with the DeepLabCut Ecosystem
Mackenzie Mathis
Enhance DeepLabCut with generative AI (AmadeusGPT) and expand the DeepLabCut AI Residency program
Field
Neuroscience
Funding Period
2024-2025
Program
Neuro Open Source Software
Open Data in Neuroscience
Institution
Swiss Federal Institute of Technology Lausanne
Collaborators
Chan Zuckerberg Initiative
Wellcome Trust
NWB GUIDE: An Open Source Software Solution for Data Conversion
Ryan Ly
Develop an open source software application to facilitate converting data into the Neurodata Without Borders (NWB) format using best practices for data and metadata structures
Field
Neuroscience
Funding Period
2023
Program
Neuro Open Source Software
Neurodata without Borders
Open Data in Neuroscience
Institution
Lawrence Berkeley National Laboratory
Identification and Characterization of Neuronal Ensembles
Ricardo Velázquez Contreras
Develop a data pipeline to characterize neuronal population activity and ensemble properties to understand how sensory stimuli and behaviors are representated across brain regions
Field
Neuroscience
Funding Period
2023
Program
NeuroData Discovery
Open Data in Neuroscience
Institution
National Autonomous University of Mexico
Building an NWB Module for Holographic Photostimulation
Mark Histed, Adam Thomas
Develop a software extension to integrate holographic photostimulation data into a data standard and integrate into two-photon image analysis packages
Field
Neuroscience
Funding Period
2023
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
National Institute of Mental Health
Extending NWB to Capture Deep Brain Stimulation Datasets
Chi Wang Ip
Develop a software extension to manage data and metadata from deep brain stimulation experiments
Field
Neuroscience
Funding Period
2023
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
University Hospital of Würzburg
Using Automated Metadata Extraction to Convert a Multimodel Dataset into NWB
Philip Tovote, Dennis Segebarth
Develop automated extraction tool to retrieve stored metadata as part of a pipeline to standardize a multi-modal dataset
Field
Neuroscience
Funding Period
2023
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
University Hospital of Würzburg
Converting Marmoset Intracellular Electrophysiology Datasets into NWB
Chenggang Chen
Develop a software extension to convert marmoset intracellular electrophysiology datasets into a data standard suitable for public access
Field
Neuroscience
Funding Period
2023
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
Johns Hopkins University
Tools and Standards for Single-Cell Modeling in Neuroscience
Sarah Keating
Develop tools and open standards to create advanced, multiscale models of neuronal cells through the COmputational Modeling in Biology NEtwork (COMBINE) initiative
Field
Neuroscience
Funding Period
2022-2023
Program
Neuro Open Source Software
Open Data in Neuroscience
Institution
University College London
AqNWB: Enabling Acquisition of Neurophysiology Data in NWB
Oliver Rübel
Develop an open C/C++ API for data acquisition for the Neurodata Without Borders (NWB) data standard
Field
Neuroscience
Funding Period
2022-2023
Program
Neuro Open Source Software
Neurodata without Borders
Open Data in Neuroscience
Institution
Lawrence Berkeley National Laboratory
Clearmap: Open Source Software for the Analysis of Cleared Tissue
Christoph Kirst
Advance functionality and accessibility of ClearMap software, to analyze large volumetric data from the brain
Field
Neuroscience
Funding Period
2022-2023
Program
Neuro Open Source Software
Open Data in Neuroscience
Institution
University of California, San Francisco
Pareto Optimality to Define Brain State Topology
Sarah Ruediger
Combine and analyze publicly available data to understand principles that shape neuronal activity across species, and gain insight into population dynamics of complex neuronal circuits
Field
Neuroscience
Funding Period
2022
Program
NeuroData Discovery
Open Data in Neuroscience
Institution
University College London
Mapping Functional Networks to Behavioral States
Tzu-Chi Yen
Develop an open source computational pipeline for constructing functional neural networks, in collaboration with Yi-Yun Ho (Massachusetts Institute of Technology)
Field
Neuroscience
Funding Period
2022
Program
NeuroData Discovery
Open Data in Neuroscience
Institution
University of Colorado, Boulder
NWB Database for Cortical Connections
Lauri Nurminen
Create a Neurodata Without Borders (NWB) database to share data for optogenetic perturbation of recurrent cortical connections
Field
Neuroscience
Funding Period
2022
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
University of Houston
NWB for Neuronal Tracing
Kurt Haas
Expand the Neurodata Without Borders (NWB) ecosytem to include the open source 4D neuron tracing software package Dynamo
Field
Neuroscience
Funding Period
2022
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
University of British Columbia
Bringing NWB to Brain-Computer Interface datasets
Christian Herff
Establish a data standard for existing brain-computer interface frameworks and datasets
Field
Neuroscience
Funding Period
2022
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
Maastricht University
Bringing NWB to the BirdSong Toolbox
Vikash Gilja, Daril Brown
Extend an open source software toolbox used for songbird neurophysiology analysis, BirdSong, to support Neurodata Without Borders (NWB)
Field
Neuroscience
Funding Period
2022
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
University of California, San Diego
NWB Pipeline for Human Single Neuron Recordings
Johannes Sarnthein, Ece Boran
Create a pipeline to convert single-unit data from working memory tasks into the Neurodata Without Borders (NWB) data standard
Field
Neuroscience
Funding Period
2022
Program
Neurodata without Borders
Open Data in Neuroscience
Institution
University of Zurich
Graph-Driven Neuronal Networks
Noga Mudrik and Adam Charles
Develop a computational model to uncover the variability of neural circuits across experimental trials, tasks and conditions, and apply this framework to publicly-available datasets